So, is it safe to fly to Cyprus? Absolutely. The data, the airlines, and the tourism numbers all say yes. You have more to worry about from a delayed suitcase than from security issues.
Book that ticket. Look up at the blue sky, and remember: flying remains the safest way to travel, statistically safer than driving to the airport. Cyprus is waiting for you with open arms and a side of tzatziki. Now, go daydream about those beaches—your only real risk is not having enough sunscreen.